C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: elongator acetyltransferase complex subunit 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000474374 ELP4-002 ENSG00000109911 9606 + 11:31509771-31650221 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaENST00000474374
Transcript ID Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta
ENST00000474374 1.172±0.00 2.757±0.00 2.490±0.00 2.159±1.31 1.633±0.00 2.497±0.00 2.921±0.00 0.365±0.00 1.935±0.00 1.500±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JA CIL_0007JA_0001 UCNEbase 11:30717111-31639896
CIL_00096G CIL_00096G_0001 VISTA 11:31180488-31781610
CIL_0008KI CIL_0008KI_0001 VISTA 11:31301275-31902571
CIL_0007UQ CIL_0007UQ_0001 VISTA 11:31363809-31965336
CIL_0008UP CIL_0008UP_0001 VISTA 11:31463875-32065678
CIL_0007XG CIL_0007XG_0001 VISTA 11:31494904-32096873

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0033588 IEA Elongator holoenzyme complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000122965 Elp4-001 protein_coding Mus_musculus 0 1064
ENSMUST00000028588 Elp4-003 protein_coding Mus_musculus 0 741
ENSMUST00000152272 Elp4-004 retained_intron Mus_musculus 0 538
ENSMUST00000148441 Elp4-002 processed_transcript Mus_musculus 9e-34 148

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