C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000475323 ARHGEF39-003 ENSG00000137135 9606 - 9:35658877-35665192 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000475323
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000475323 3.997±0.00 3.491±0.00 0.020±0.00 1.348±0.65 11.515±0.00 10.231±0.00 3.188±0.00 1.642±1.58 2.247±0.00 4.548±0.00 3.132±2.57 3.740±0.51 3.095±1.05 3.489±0.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00072Q CIL_00072Q_0001 CGP 9:35649295-35661511
CIL_00072N CIL_00072N_0001 CGP 9:35658290-35675866
CIL_00072O CIL_00072O_0001 CGP 9:35658875-35681159

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005886 IDA plasma membrane
GO:0030335 IDA positive regulation of cell migration
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0035023 IEA regulation of Rho protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000146781 Arhgef39-005 processed_transcript Mus_musculus 0 545
ENSMUST00000125834 Arhgef39-004 processed_transcript Mus_musculus 0 545
ENSMUST00000054538 Arhgef39-001 protein_coding Mus_musculus 0 545
ENSMUST00000147124 Arhgef39-007 processed_transcript Mus_musculus 0 324
ENSMUST00000154905 Arhgef39-006 processed_transcript Mus_musculus 0 324
ENSMUST00000136005 Arhgef39-010 protein_coding Mus_musculus 0 324
ENSMUST00000128754 Arhgef39-002 processed_transcript Mus_musculus 0 324

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