C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000475555 RP11-364L4.1-001 ENSG00000228981 9606 - 4:143349275-143350117 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyMuscleOvaryPlacentaTestisENST00000475555
Transcript ID Adrenal Brain Breast Colon Heart Kidney Muscle Ovary Placenta Testis
ENST00000475555 0.811±0.00 0.067±0.00 0.316±0.00 0.254±0.00 0.471±0.39 0.124±0.03 0.872±0.00 0.960±0.18 0.708±0.00 0.243±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MQ CIL_0006MQ_0002 CGP 4:143184917-143474568

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000186517 RP23-128A11.3-001 processed_pseudogene Mus_musculus 0 821
ENSMUST00000119247 Gm15653-001 processed_pseudogene Mus_musculus 0 671
ENSDART00000110842 rps2-201 protein_coding Danio_rerio 0 640
ENSDART00000138107 rps2-001 protein_coding Danio_rerio 0 640
ENSMUST00000119578 Gm11643-001 processed_pseudogene Mus_musculus 0 638
ENSMUST00000117930 Gm13094-001 processed_pseudogene Mus_musculus 0 453
ENSMUST00000120073 Gm12029-001 processed_pseudogene Mus_musculus 0 405
ENSDART00000141100 rps2-002 protein_coding Danio_rerio 1.96182e-44 183
ENSMUST00000121713 Gm10420-001 processed_pseudogene Mus_musculus 2e-24 117
ENSMUST00000076842 Rps2-ps10-001 transcribed_processed_pseudogene Mus_musculus 7e-24 115
ENSMUST00000170335 Rps2-ps10-002 processed_transcript Mus_musculus 7e-24 115
ENSMUST00000117295 Rps2-ps13-001 processed_pseudogene Mus_musculus 7e-24 115
ENSMUST00000118634 Gm6433-001 processed_pseudogene Mus_musculus 3e-22 110
ENSMUST00000170715 Rps2-201 protein_coding Mus_musculus 3e-22 110
ENSMUST00000122809 Rps2-004 retained_intron Mus_musculus 3e-22 110
ENSMUST00000129984 Rps2-007 retained_intron Mus_musculus 3e-22 110
ENSMUST00000146867 Rps2-002 protein_coding Mus_musculus 3e-22 110
ENSMUST00000054289 Rps2-001 protein_coding Mus_musculus 3e-22 110
ENSMUST00000152407 Rps2-003 protein_coding Mus_musculus 3e-22 110
ENSMUST00000085368 Gm5786-201 protein_coding Mus_musculus 3e-22 110
ENSDART00000133878 rps2-003 retained_intron Danio_rerio 1e-21 108
ENSMUST00000118911 Gm11687-001 processed_pseudogene Mus_musculus 2e-19 100
ENSMUST00000120203 Gm12933-001 processed_pseudogene Mus_musculus 0.0000000001 71

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