C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S27a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000478196 RPS27A-008 ENSG00000143947 9606 + 2:55232689-55235184 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLungMuscleOvaryENST00000478196
Transcript ID Brain Breast Heart Kidney Lung Muscle Ovary
ENST00000478196 46.449±0.00 71.176±0.00 9.190±0.00 45.925±0.00 88.146±0.00 47.211±0.00 78.884±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000Z4 CIL_0000Z4_0002 CGP 2:55231903-55269347

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102845 Rps27a-003 protein_coding Mus_musculus 0 512
ENSMUST00000102844 Rps27a-004 protein_coding Mus_musculus 0 494
ENSMUST00000078766 Rps27a-ps2-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000119780 Gm8430-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000121742 Gm11759-001 processed_pseudogene Mus_musculus 0 427
ENSMUST00000121261 Gm8317-001 processed_pseudogene Mus_musculus 0 427
ENSMUST00000160015 Gm16139-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000119963 Gm13815-001 processed_pseudogene Mus_musculus 0 318
ENSMUST00000120658 Gm13622-001 processed_pseudogene Mus_musculus 0 311
ENSMUST00000181136 Gm27018-001 processed_pseudogene Mus_musculus 0 311
ENSMUST00000150739 Rps27a-005 processed_transcript Mus_musculus 0 189
ENSMUST00000117540 Gm13428-001 processed_pseudogene Mus_musculus 1e-39 167
ENSMUST00000143418 Rps27a-001 processed_transcript Mus_musculus 2e-18 97
ENSMUST00000147782 Rps27a-002 processed_transcript Mus_musculus 0 198
ENSMUST00000121696 Gm12882-001 processed_pseudogene Mus_musculus 0 287
ENSMUST00000185489 RP23-125B4.3-001 processed_pseudogene Mus_musculus 0 265

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