C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000478358 RP11-490G8.1-001 ENSG00000241556 9606 - 12:95467397-95467861 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartLiverMuscleOvaryPlacentaENST00000478358
Transcript ID Adrenal Brain Breast Heart Liver Muscle Ovary Placenta
ENST00000478358 0.046±0.00 0.051±0.00 0.049±0.00 0.060±0.00 0.083±0.04 0.040±0.00 2.124±0.00 0.206±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000Y1 CIL_0000Y1_0002 CGP 12:95217746-95515839

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000059802 Rpl29-002 protein_coding Mus_musculus 0 394
ENSMUST00000150576 Rpl29-001 protein_coding Mus_musculus 0 394
ENSMUST00000075962 Gm6344-001 processed_pseudogene Mus_musculus 0 381
ENSMUST00000118829 Gm13841-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000178557 Gm8210-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000179718 Gm15454-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000098994 Gm10709-201 protein_coding Mus_musculus 0 377
ENSMUST00000118248 Gm14036-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000121282 Gm12508-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000119110 Gm12447-001 processed_pseudogene Mus_musculus 0 364
ENSMUST00000118562 Gm12987-001 processed_pseudogene Mus_musculus 0 363
ENSMUST00000133732 Gm10913-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000086508 Rpl29-ps2-201 processed_pseudogene Mus_musculus 0 355
ENSMUST00000128641 Uimc1-003 retained_intron Mus_musculus 0 353
ENSMUST00000163749 Gm17669-201 protein_coding Mus_musculus 0 351
ENSMUST00000178932 Gm5561-201 processed_pseudogene Mus_musculus 0 350
ENSMUST00000105038 Gm3550-201 protein_coding Mus_musculus 0 350
ENSMUST00000120287 Gm11533-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000119175 Gm11449-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000119801 Gm11955-001 processed_pseudogene Mus_musculus 0 340
ENSMUST00000172270 Gm5218-201 protein_coding Mus_musculus 0 340
ENSMUST00000119789 Gm12704-001 processed_pseudogene Mus_musculus 0 337
ENSMUST00000077493 Gm8412-001 processed_pseudogene Mus_musculus 0 335
ENSMUST00000119668 Gm13213-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000075321 Gm4889-201 protein_coding Mus_musculus 0 327
ENSMUST00000120582 Gm15467-001 processed_pseudogene Mus_musculus 0 324
ENSMUST00000121617 Gm12340-001 unprocessed_pseudogene Mus_musculus 0 313
ENSMUST00000119044 Gm13545-001 processed_pseudogene Mus_musculus 0 309
ENSMUST00000075152 Gm4945-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000122403 Gm15212-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000176181 Gm20702-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000112504 Gm15526-001 processed_pseudogene Mus_musculus 0 292
ENSMUST00000117417 Gm13141-001 processed_pseudogene Mus_musculus 0 287
ENSMUST00000188361 RP23-299M19.2-001 processed_pseudogene Mus_musculus 0 272
ENSMUST00000117250 Gm12193-001 processed_pseudogene Mus_musculus 0 243
ENSMUST00000186887 RP23-186M2.2-001 processed_pseudogene Mus_musculus 0 243
ENSMUST00000161849 Rpl29-ps1-001 processed_pseudogene Mus_musculus 0 226
ENSDART00000111140 RPL29-201 protein_coding Danio_rerio 0 206
ENSMUST00000118333 Gm12937-001 processed_pseudogene Mus_musculus 0 189
ENSMUST00000118671 Gm3267-001 processed_pseudogene Mus_musculus 2.8026e-45 185
ENSMUST00000120590 Gm13740-001 processed_pseudogene Mus_musculus 4e-29 132
ENSMUST00000186496 RP23-464K22.5-001 processed_pseudogene Mus_musculus 5e-28 128
ENSMUST00000118520 Gm11926-001 processed_pseudogene Mus_musculus 5e-23 111
ENSMUST00000123226 Ptch2-003 retained_intron Mus_musculus 2e-21 106

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