C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | breast cancer 1, early onset | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000478531  |
BRCA1-009 |
ENSG00000012048 |
9606 | - |
17:43063344-43125359  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00061F | CIL_00061F_0001 | CGP | 17:43025241-43125483 |
| CIL_00040M | CIL_00040M_0001 | CGP | 17:43044295-43211689 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0003677 | IEA | DNA binding |
| GO:0004842 | IEA | ubiquitin-protein transferase activity |
| GO:0005515 | IEA | protein binding |
| GO:0005634 | IEA | nucleus |
| GO:0006281 | IEA | DNA repair |
| GO:0008270 | IEA | zinc ion binding |
| GO:0016567 | IEA | protein ubiquitination |
| GO:0046872 | IEA | metal ion binding |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000017290
|
Brca1-001 | protein_coding | Mus_musculus | 0 | 580 |
|
ENSMUST00000142086
|
Brca1-002 | nonsense_mediated_decay | Mus_musculus | 0 | 302 |
|
ENSMUST00000190862
|
Brca1-005 | protein_coding | Mus_musculus | 0 | 259 |
