C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L23
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000479035 RPL23-001 ENSG00000125691 9606 - 17:38847867-38853843 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartENST00000479035
Transcript ID Brain Heart
ENST00000479035 2.577±0.00 2.654±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00003Y CIL_00003Y_0001 CGP 17:38835088-38853843
CIL_0006QO CIL_0006QO_0001 CGP 17:38847865-38921770

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005730 IEA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA:NAS ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006610 NAS ribosomal protein import into nucleus
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000081104 Timm17a-001 protein_coding Mus_musculus 0.0002 53

Loading