C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type II, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000480032 SCN2A-005 ENSG00000136531 9606 + 2:165294044-165381003 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartLiverOvaryPlacentaENST00000480032
Transcript ID Breast Heart Liver Ovary Placenta
ENST00000480032 0.078±0.00 0.030±0.00 0.034±0.00 0.155±0.00 0.012±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CO CIL_0006CO_0001 CGP 2:165087522-165392308
CIL_0006CJ CIL_0006CJ_0001 CGP 2:165239402-165689407

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028377 Scn2a1-001 protein_coding Mus_musculus 0 4872
ENSMUST00000100067 Scn2a1-201 protein_coding Mus_musculus 0 4870
ENSMUST00000112371 Scn1a-201 protein_coding Mus_musculus 0 3057
ENSMUST00000077489 Scn1a-004 protein_coding Mus_musculus 0 3049
ENSMUST00000112366 Scn1a-001 protein_coding Mus_musculus 0 1570
ENSMUST00000094951 Scn1a-005 protein_coding Mus_musculus 0 1543
ENSMUST00000100069 Scn3a-001 protein_coding Mus_musculus 0 1447
ENSMUST00000066432 Scn3a-201 protein_coding Mus_musculus 0 1441
ENSMUST00000169900 Scn9a-203 protein_coding Mus_musculus 0 643
ENSMUST00000144254 Scn2a1-002 protein_coding Mus_musculus 0 640
ENSMUST00000138910 Scn1a-006 protein_coding Mus_musculus 0 536
ENSMUST00000156865 Scn1a-003 processed_transcript Mus_musculus 0 477
ENSMUST00000108910 Scn8a-205 protein_coding Mus_musculus 0 451
ENSDART00000022042 scn8aa-001 protein_coding Danio_rerio 0 435
ENSMUST00000108908 Scn8a-203 protein_coding Mus_musculus 0 422
ENSMUST00000108909 Scn8a-204 protein_coding Mus_musculus 0 422
ENSMUST00000138368 Scn2a1-003 processed_transcript Mus_musculus 0 366
ENSMUST00000129508 Scn1a-002 processed_transcript Mus_musculus 0 309
ENSDART00000097722 SCN11A-201 protein_coding Danio_rerio 0 250

Loading