C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vascular endothelial growth factor A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000480614 VEGFA-007 ENSG00000112715 9606 + 6:43773172-43786484 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000480614
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000480614 1.420±0.00 3.165±0.00 0.250±0.09 2.873±0.00 1.027±0.11 1.192±0.00 0.917±0.00 4.576±0.00 2.845±0.23 1.367±0.00 2.415±0.01 0.388±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YI CIL_0008YI_0001 VISTA 6:43493027-44094540

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071648 Vegfa-001 protein_coding Mus_musculus 0 1535
ENSMUST00000167860 Vegfa-201 protein_coding Mus_musculus 0 1530
ENSMUST00000024747 Vegfa-008 protein_coding Mus_musculus 0 1530
ENSMUST00000150327 Vegfa-007 retained_intron Mus_musculus 0 409
ENSMUST00000143985 Vegfa-006 retained_intron Mus_musculus 0 392
ENSMUST00000113519 Vegfa-009 protein_coding Mus_musculus 0 370
ENSMUST00000113520 Vegfa-010 protein_coding Mus_musculus 0 370
ENSMUST00000142351 Vegfa-003 protein_coding Mus_musculus 0 370
ENSMUST00000133605 Vegfa-004 retained_intron Mus_musculus 0 292
ENSMUST00000146149 Vegfa-002 retained_intron Mus_musculus 0 222
ENSMUST00000142321 Vegfa-005 retained_intron Mus_musculus 0 222

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