C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromosome 6 open reading frame 89
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000480824 C6orf89-004 ENSG00000198663 9606 + 6:36885854-36928964 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000480824
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000480824 3.001±0.00 5.531±1.27 3.103±0.55 3.828±0.95 3.795±1.06 1.583±0.00 4.428±2.64 4.272±0.00 8.669±5.76 5.694±3.72 8.966±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002Y7 CIL_0002Y7_0001 CGP 6:36740775-36875024
CIL_00089L CIL_00089L_0001 VISTA 6:36799205-37399713
CIL_0002Y6 CIL_0002Y6_0001 CGP 6:36854827-36928964
CIL_0002Y9 CIL_0002Y9_0001 CGP 6:36871870-36964837

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005886 IDA plasma membrane
GO:0016021 IEA integral component of membrane
GO:0042060 IDA wound healing
GO:0045787 IDA positive regulation of cell cycle
GO:0050673 IDA epithelial cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000149405 BC004004-004 protein_coding Mus_musculus 0 1099
ENSMUST00000064709 BC004004-001 protein_coding Mus_musculus 0 1099
ENSMUST00000120346 BC004004-002 protein_coding Mus_musculus 0 1098
ENSMUST00000156215 BC004004-003 retained_intron Mus_musculus 0 268
ENSMUST00000150874 BC004004-005 processed_transcript Mus_musculus 0 261

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