C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GRIP and coiled-coil domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000482325 GCC2-001 ENSG00000135968 9606 + 2:108449240-108509397 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000482325
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000482325 2.325±0.00 3.499±0.00 1.616±0.00 4.454±1.89 2.338±0.45 3.590±0.00 1.110±0.65 2.501±1.15 0.546±0.00 3.063±0.69 0.520±0.23 7.189±6.26 2.164±1.50 4.780±0.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RA CIL_0007RA_0001 VISTA 2:108335931-108937600
CIL_00010T CIL_00010T_0001 CGP 2:108448561-108687246

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000042 IEA protein targeting to Golgi
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005802 IDA trans-Golgi network
GO:0006622 IMP protein targeting to lysosome
GO:0016020 IDA membrane
GO:0031023 IMP microtubule organizing center organization
GO:0034067 IMP protein localization to Golgi apparatus
GO:0034453 IMP microtubule anchoring
GO:0034499 IMP late endosome to Golgi transport
GO:0042147 IMP retrograde transport, endosome to Golgi
GO:0042802 IPI identical protein binding
GO:0070861 IMP regulation of protein exit from endoplasmic reticulum
GO:0071955 IMP recycling endosome to Golgi transport
GO:0090161 IMP Golgi ribbon formation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000162860 Gcc2-005 protein_coding Mus_musculus 0 4477
ENSMUST00000162041 Gcc2-002 protein_coding Mus_musculus 0 4414
ENSMUST00000057659 Gcc2-001 protein_coding Mus_musculus 0 4414
ENSMUST00000160636 Gcc2-010 retained_intron Mus_musculus 0 878
ENSMUST00000160416 Gcc2-009 protein_coding Mus_musculus 0 486
ENSMUST00000162984 Gcc2-006 nonsense_mediated_decay Mus_musculus 0 327
ENSMUST00000160427 Gcc2-007 protein_coding Mus_musculus 0 294
ENSMUST00000162965 Gcc2-003 retained_intron Mus_musculus 0 193
ENSMUST00000161570 Gcc2-008 processed_transcript Mus_musculus 2.8026e-45 189

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