C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: major histocompatibility complex, class I, L (pseudogene)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000482589 HLA-L-001 ENSG00000243492 9606 + CHR_HSCHR6_MHC_COX_CTG1:30249501-30252221 transcribed_unprocessed_pseudogene

Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172785 H2-D1-001 protein_coding Mus_musculus 0 726
ENSMUST00000025181 H2-K1-001 protein_coding Mus_musculus 0 719
ENSMUST00000114311 H2-K1-002 retained_intron Mus_musculus 0 719
ENSMUST00000172912 H2-K1-003 protein_coding Mus_musculus 0 719
ENSMUST00000174250 H2-K2-001 unprocessed_pseudogene Mus_musculus 0 710
ENSMUST00000097335 Gm8909-201 protein_coding Mus_musculus 0 693
ENSMUST00000040467 Gm8909-001 protein_coding Mus_musculus 0 693
ENSMUST00000173353 Gm8909-002 protein_coding Mus_musculus 0 693
ENSMUST00000076256 H2-Q7-201 protein_coding Mus_musculus 0 673
ENSMUST00000113879 H2-Q6-201 protein_coding Mus_musculus 0 667
ENSMUST00000174699 H2-Q6-001 protein_coding Mus_musculus 0 667
ENSMUST00000078205 H2-Q7-202 protein_coding Mus_musculus 0 665
ENSMUST00000071951 H2-Q7-001 protein_coding Mus_musculus 0 665
ENSMUST00000172979 H2-Q5-001 polymorphic_pseudogene Mus_musculus 0 664
ENSMUST00000102678 H2-T23-001 protein_coding Mus_musculus 0 621
ENSMUST00000073208 H2-Q1-001 protein_coding Mus_musculus 0 593
ENSMUST00000105041 H2-Q1-002 protein_coding Mus_musculus 0 593
ENSMUST00000173080 H2-Bl-201 protein_coding Mus_musculus 0 592
ENSMUST00000173075 H2-K1-010 protein_coding Mus_musculus 0 588
ENSMUST00000173625 Gm8909-004 processed_transcript Mus_musculus 0 468
ENSMUST00000174778 Gm10499-001 retained_intron Mus_musculus 0 449
ENSMUST00000113742 Gm11127-001 protein_coding Mus_musculus 0 422
ENSMUST00000172994 H2-Q1-003 retained_intron Mus_musculus 0 418
ENSMUST00000046131 Gm7030-201 protein_coding Mus_musculus 0 403
ENSMUST00000173322 Gm7030-001 protein_coding Mus_musculus 0 403
ENSMUST00000172968 Gm7030-202 protein_coding Mus_musculus 0 396
ENSMUST00000185087 H2-Bl-005 nonsense_mediated_decay Mus_musculus 0 394
ENSMUST00000174839 H2-T23-002 retained_intron Mus_musculus 0 351
ENSMUST00000174161 H2-T23-003 retained_intron Mus_musculus 0 351
ENSMUST00000174693 Gm8909-003 processed_transcript Mus_musculus 0 329
ENSMUST00000087189 H2-K1-005 protein_coding Mus_musculus 0 329
ENSMUST00000174325 H2-D1-005 retained_intron Mus_musculus 0 327
ENSMUST00000077960 H2-T22-002 protein_coding Mus_musculus 0 324
ENSMUST00000080015 H2-T22-001 protein_coding Mus_musculus 0 324
ENSMUST00000173280 H2-T22-005 nonsense_mediated_decay Mus_musculus 0 324
ENSMUST00000173317 H2-K1-009 retained_intron Mus_musculus 0 322
ENSMUST00000173602 H2-K1-004 retained_intron Mus_musculus 0 322
ENSMUST00000185167 H2-Bl-002 nonsense_mediated_decay Mus_musculus 0 322
ENSMUST00000184850 H2-Bl-006 retained_intron Mus_musculus 0 322
ENSMUST00000173133 H2-T3-006 nonsense_mediated_decay Mus_musculus 0 320
ENSMUST00000102675 H2-T3-001 protein_coding Mus_musculus 0 320
ENSMUST00000058801 H2-T22-003 protein_coding Mus_musculus 0 316
ENSMUST00000172633 H2-T22-004 retained_intron Mus_musculus 0 316
ENSMUST00000173435 H2-T3-007 retained_intron Mus_musculus 0 313
ENSMUST00000173577 H2-T3-004 retained_intron Mus_musculus 0 313
ENSMUST00000173016 H2-Q7-002 retained_intron Mus_musculus 0 302
ENSMUST00000173788 H2-Q7-003 retained_intron Mus_musculus 0 302
ENSMUST00000025312 H2-T3-005 protein_coding Mus_musculus 0 281
ENSMUST00000095300 H2-T3-003 nonsense_mediated_decay Mus_musculus 0 270
ENSMUST00000174101 H2-T3-002 nonsense_mediated_decay Mus_musculus 0 270
ENSMUST00000172663 H2-T3-008 nonsense_mediated_decay Mus_musculus 0 270
ENSMUST00000173629 H2-T3-009 nonsense_mediated_decay Mus_musculus 0 270
ENSMUST00000172895 Gm8810-001 unprocessed_pseudogene Mus_musculus 0 263
ENSMUST00000173127 Gm9574-001 unprocessed_pseudogene Mus_musculus 0 257
ENSMUST00000173402 Gm5682-001 unprocessed_pseudogene Mus_musculus 0 196
ENSMUST00000183999 H2-Bl-011 protein_coding Mus_musculus 0.0000004 60

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