C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L7a pseudogene 30
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000482859 RPL7AP30-001 ENSG00000241741 9606 - 4:112788083-112788878 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000482859
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000482859 0.243±0.00 0.211±0.00 0.063±0.00 0.177±0.00 0.256±0.00 0.388±0.00 0.166±0.00 0.097±0.00 0.575±0.00 0.369±0.00 0.205±0.13 0.159±0.06 0.120±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WR CIL_0008WR_0001 VISTA 4:112221234-112822374

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000085365 Gm16477-001 processed_pseudogene Mus_musculus 0 893
ENSMUST00000118791 Rpl7a-ps11-001 processed_pseudogene Mus_musculus 0 887
ENSMUST00000190511 RP23-58N8.1-001 processed_pseudogene Mus_musculus 0 881
ENSMUST00000102898 Rpl7a-001 protein_coding Mus_musculus 0 876
ENSMUST00000120676 Gm12712-001 processed_pseudogene Mus_musculus 0 870
ENSMUST00000090170 Rpl7a-ps3-201 protein_coding Mus_musculus 0 870
ENSMUST00000190579 Rpl7a-ps10-001 processed_pseudogene Mus_musculus 0 854
ENSMUST00000094754 Rpl7a-ps8-201 protein_coding Mus_musculus 0 854
ENSMUST00000183380 Gm17828-001 processed_pseudogene Mus_musculus 0 845
ENSMUST00000095218 Rpl7a-ps5-201 protein_coding Mus_musculus 0 843
ENSMUST00000096427 Gm17415-001 processed_pseudogene Mus_musculus 0 837
ENSMUST00000145247 Gm6286-001 processed_pseudogene Mus_musculus 0 832
ENSMUST00000071172 RP23-58N8.4-001 processed_pseudogene Mus_musculus 0 822
ENSMUST00000191231 RP24-217I2.2-001 processed_pseudogene Mus_musculus 0 821
ENSMUST00000162120 Gm7418-001 processed_pseudogene Mus_musculus 0 804
ENSMUST00000189720 RP23-321G17.2-001 processed_pseudogene Mus_musculus 0 797
ENSMUST00000119745 Gm13864-001 processed_pseudogene Mus_musculus 0 795
ENSMUST00000071565 Gm4978-201 protein_coding Mus_musculus 0 791
ENSMUST00000119589 Gm16071-001 processed_pseudogene Mus_musculus 0 773
ENSMUST00000120384 Rpl7a-ps12-001 processed_pseudogene Mus_musculus 0 769
ENSMUST00000117398 Gm8250-001 processed_pseudogene Mus_musculus 0 758
ENSMUST00000151645 Gm7847-001 processed_pseudogene Mus_musculus 0 758
ENSMUST00000120032 Gm13666-001 processed_pseudogene Mus_musculus 0 752
ENSMUST00000171235 Gm5459-001 processed_pseudogene Mus_musculus 0 749
ENSMUST00000122355 Gm11760-001 processed_pseudogene Mus_musculus 0 741
ENSMUST00000139800 Gm5353-001 processed_pseudogene Mus_musculus 0 737
ENSMUST00000185999 RP23-16N14.6-001 processed_pseudogene Mus_musculus 0 737
ENSMUST00000104977 Gm4877-201 protein_coding Mus_musculus 0 736
ENSMUST00000121823 Gm5257-001 processed_pseudogene Mus_musculus 0 725
ENSMUST00000119629 Gm11979-001 processed_pseudogene Mus_musculus 0 719
ENSMUST00000136269 Rpl7a-002 processed_transcript Mus_musculus 0 712
ENSMUST00000119952 Gm15836-001 processed_pseudogene Mus_musculus 0 710
ENSMUST00000165944 RP24-170M24.1-001 processed_pseudogene Mus_musculus 0 706
ENSMUST00000120236 Gm14141-001 processed_pseudogene Mus_musculus 0 671
ENSMUST00000137376 Rpl7a-004 processed_transcript Mus_musculus 0 649
ENSMUST00000120504 Gm12124-001 processed_pseudogene Mus_musculus 0 634
ENSMUST00000118615 Gm13183-001 processed_pseudogene Mus_musculus 0 612
ENSMUST00000118766 Gm16198-001 processed_pseudogene Mus_musculus 0 601
ENSMUST00000118838 Gm11362-001 processed_pseudogene Mus_musculus 0 595
ENSMUST00000116081 Gm14853-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000121538 Gm14156-001 processed_pseudogene Mus_musculus 0 536
ENSMUST00000118582 Gm14082-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000120981 Gm12593-001 processed_pseudogene Mus_musculus 0 520
ENSMUST00000119908 Gm9005-001 processed_pseudogene Mus_musculus 0 484
ENSMUST00000143678 Rpl7a-003 processed_transcript Mus_musculus 0 457
ENSMUST00000117289 Gm16394-001 processed_pseudogene Mus_musculus 0 324
ENSMUST00000166414 Gm17097-001 processed_pseudogene Mus_musculus 4.00001e-41 172
ENSMUST00000119048 Gm15041-001 processed_pseudogene Mus_musculus 2e-23 113
ENSMUST00000119982 Gm15007-001 processed_pseudogene Mus_musculus 0.00000000004 73

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