C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000484182 RP11-538P18.1-001 ENSG00000243314 9606 + 3:158496561-158496934 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonHeartLiverTestisENST00000484182
Transcript ID Adrenal Colon Heart Liver Testis
ENST00000484182 0.037±0.00 0.137±0.00 0.068±0.00 2.329±0.00 0.085±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KJ CIL_0007KJ_0001 UCNEbase 3:157856332-158528467
CIL_0008BN CIL_0008BN_0001 VISTA 3:157971822-158572677
CIL_00086V CIL_00086V_0001 VISTA 3:157991733-158593047
CIL_0008BM CIL_0008BM_0001 VISTA 3:158007957-158609595
CIL_0008KO CIL_0008KO_0001 VISTA 3:158067861-158669043
CIL_0004JW CIL_0004JW_0002 CGP 3:158095954-158545730
CIL_000808 CIL_000808_0001 VISTA 3:158183764-158784540
CIL_000815 CIL_000815_0001 VISTA 3:158228062-158828791
CIL_000937 CIL_000937_0001 VISTA 3:158468467-159075583

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000086764 Rps12-ps3-201 protein_coding Mus_musculus 0 228
ENSMUST00000118272 Rps12-ps5-001 processed_pseudogene Mus_musculus 0 226
ENSMUST00000117447 Rps12-ps10-001 processed_pseudogene Mus_musculus 0 224
ENSMUST00000183090 Rps12l1-001 processed_pseudogene Mus_musculus 0 224
ENSMUST00000073926 Rps12-201 protein_coding Mus_musculus 0 224
ENSMUST00000121168 Rps12-ps20-001 processed_pseudogene Mus_musculus 0 217
ENSMUST00000178172 Rps12-ps21-001 processed_pseudogene Mus_musculus 0 217
ENSMUST00000139165 Rps12-ps9-001 processed_pseudogene Mus_musculus 0 213
ENSMUST00000179414 Rps12-ps23-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000179382 Rps12-ps22-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000119773 Rps12-ps19-001 processed_pseudogene Mus_musculus 0 204
ENSMUST00000179356 Rps12-ps14-001 processed_pseudogene Mus_musculus 0 202
ENSMUST00000178365 Rps12-ps13-001 processed_pseudogene Mus_musculus 0 202
ENSMUST00000179567 Rps12-ps15-001 processed_pseudogene Mus_musculus 0 202
ENSMUST00000179020 Rps12-ps12-001 processed_pseudogene Mus_musculus 0 202
ENSMUST00000178427 Rps12-ps11-001 processed_pseudogene Mus_musculus 0 202
ENSMUST00000118529 Rps12-ps16-001 processed_pseudogene Mus_musculus 0 196
ENSMUST00000179067 Rps12-ps17-001 processed_pseudogene Mus_musculus 0 196
ENSMUST00000179420 Rps12-ps18-001 processed_pseudogene Mus_musculus 0 196
ENSMUST00000179239 Rps12-ps6-001 processed_pseudogene Mus_musculus 0 196
ENSMUST00000182321 Rps12l2-001 processed_pseudogene Mus_musculus 4e-33 145
ENSMUST00000117751 Rps12-ps26-001 processed_pseudogene Mus_musculus 2e-21 106

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