C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: major histocompatibility complex, class I, C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000484378 HLA-C-012 ENSG00000204525 9606 - 6:31271099-31272090 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000420 CIL_000420_0001 CGP 6:31268749-31357188

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172785 H2-D1-001 protein_coding Mus_musculus 0 296
ENSMUST00000068291 H2-Q10-201 protein_coding Mus_musculus 0 292
ENSMUST00000174525 H2-Q10-001 protein_coding Mus_musculus 0 292
ENSMUST00000174589 H2-Q10-002 retained_intron Mus_musculus 0 281
ENSMUST00000097335 Gm8909-201 protein_coding Mus_musculus 0 276
ENSMUST00000040467 Gm8909-001 protein_coding Mus_musculus 0 276
ENSMUST00000173353 Gm8909-002 protein_coding Mus_musculus 0 276
ENSMUST00000174250 H2-K2-001 unprocessed_pseudogene Mus_musculus 0 270
ENSMUST00000173975 H2-Q4-002 retained_intron Mus_musculus 0 270
ENSMUST00000172994 H2-Q1-003 retained_intron Mus_musculus 0 263
ENSMUST00000172979 H2-Q5-001 polymorphic_pseudogene Mus_musculus 0 250
ENSMUST00000174854 H2-Q5-002 retained_intron Mus_musculus 0 250
ENSMUST00000174094 Gm10499-002 transcribed_unprocessed_pseudogene Mus_musculus 0 248
ENSMUST00000076256 H2-Q7-201 protein_coding Mus_musculus 0 244
ENSMUST00000078205 H2-Q7-202 protein_coding Mus_musculus 0 244
ENSMUST00000116598 H2-Q7-203 protein_coding Mus_musculus 0 244
ENSMUST00000173788 H2-Q7-003 retained_intron Mus_musculus 0 244
ENSMUST00000071951 H2-Q7-001 protein_coding Mus_musculus 0 244
ENSMUST00000174778 Gm10499-001 retained_intron Mus_musculus 0 243
ENSMUST00000073208 H2-Q1-001 protein_coding Mus_musculus 0 243
ENSMUST00000105041 H2-Q1-002 protein_coding Mus_musculus 0 243
ENSMUST00000081435 H2-Q4-001 protein_coding Mus_musculus 0 241
ENSMUST00000074806 H2-Q2-001 protein_coding Mus_musculus 0 235
ENSMUST00000113879 H2-Q6-201 protein_coding Mus_musculus 0 233
ENSMUST00000174699 H2-Q6-001 protein_coding Mus_musculus 0 233
ENSMUST00000172538 C920025E04Rik-001 unprocessed_pseudogene Mus_musculus 0 217
ENSMUST00000174471 H2-T23-005 retained_intron Mus_musculus 0 215
ENSMUST00000174161 H2-T23-003 retained_intron Mus_musculus 0 215
ENSMUST00000174839 H2-T23-002 retained_intron Mus_musculus 0 204
ENSMUST00000102678 H2-T23-001 protein_coding Mus_musculus 0 204
ENSMUST00000173075 H2-K1-010 protein_coding Mus_musculus 0 204
ENSMUST00000025181 H2-K1-001 protein_coding Mus_musculus 0 204
ENSMUST00000114311 H2-K1-002 retained_intron Mus_musculus 0 204
ENSMUST00000172912 H2-K1-003 protein_coding Mus_musculus 0 204
ENSMUST00000172782 H2-K1-007 processed_transcript Mus_musculus 5e-35 152
ENSMUST00000184502 H2-Bl-008 protein_coding Mus_musculus 1e-26 124
ENSMUST00000173080 H2-Bl-201 protein_coding Mus_musculus 1e-26 124
ENSMUST00000185087 H2-Bl-005 nonsense_mediated_decay Mus_musculus 0.00000000004 73

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