C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000484625 RP11-477G18.2-001 ENSG00000243280 9606 + 4:112171215-112171527 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLiverLungMuscleOvaryTestisENST00000484625
Transcript ID Adipose Adrenal Breast Colon Heart Liver Lung Muscle Ovary Testis
ENST00000484625 0.498±0.00 0.047±0.00 1.533±1.11 1.569±1.26 0.132±0.00 9.465±0.00 0.151±0.00 4.323±0.00 0.156±0.01 0.084±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007P9 CIL_0007P9_0001 UCNEbase 4:110617607-112523533
CIL_00080F CIL_00080F_0001 VISTA 4:111826456-112428336

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113211 Rpl36a-001 protein_coding Mus_musculus 0 340
ENSMUST00000172023 Rpl36a-003 retained_intron Mus_musculus 0 335
ENSMUST00000170828 Rpl36a-004 nonsense_mediated_decay Mus_musculus 0 333
ENSMUST00000149857 Rpl36a-005 retained_intron Mus_musculus 0 327
ENSMUST00000142299 Gm13194-001 processed_pseudogene Mus_musculus 0 285
ENSMUST00000169457 Rpl36a-006 retained_intron Mus_musculus 2.99878e-43 178
ENSMUST00000119325 Gm15162-001 processed_pseudogene Mus_musculus 1e-36 156

Loading