C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein SA pseudogene 56
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000484897 RPSAP56-001 ENSG00000225178 9606 - 16:73940639-73941524 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000484897
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000484897 0.258±0.00 1.021±0.00 0.258±0.00 0.227±0.00 0.859±0.00 0.053±0.00 1.193±0.00 0.294±0.00 0.910±0.00 0.215±0.00 0.046±0.00 0.732±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KL CIL_0007KL_0001 UCNEbase 16:72373211-73946064
CIL_0008VZ CIL_0008VZ_0001 VISTA 16:73491294-74094667

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057740 Rpsa-ps10-201 protein_coding Mus_musculus 0 985
ENSMUST00000035105 Rpsa-201 protein_coding Mus_musculus 0 974
ENSMUST00000120702 Rpsa-ps9-001 processed_pseudogene Mus_musculus 0 961
ENSMUST00000121691 Rpsa-ps4-001 processed_pseudogene Mus_musculus 0 935
ENSMUST00000120596 Rpsa-ps12-001 processed_pseudogene Mus_musculus 0 889
ENSMUST00000191040 Rpsa-ps1-001 processed_pseudogene Mus_musculus 0 863
ENSMUST00000118446 Rpsa-ps11-001 processed_pseudogene Mus_musculus 0 863
ENSMUST00000120191 Gm11824-001 processed_pseudogene Mus_musculus 0 852
ENSMUST00000120423 Gm9083-001 processed_pseudogene Mus_musculus 0 833
ENSMUST00000186198 RP23-2I19.1-001 processed_pseudogene Mus_musculus 0 630
ENSMUST00000059546 Rpsa-ps2-201 processed_pseudogene Mus_musculus 0 579
ENSDART00000135945 rpsa-001 protein_coding Danio_rerio 0 531
ENSMUST00000162286 Gm16228-001 processed_pseudogene Mus_musculus 0 215

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