C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000485258 RP11-600F24.1-001 ENSG00000243904 9606 - 14:103374033-103374916 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000485258
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000485258 0.020±0.00 0.146±0.00 0.022±0.00 0.080±0.00 0.038±0.00 0.107±0.00 0.080±0.00 0.054±0.00 0.037±0.01 0.074±0.00 0.057±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00016S CIL_00016S_0001 CGP 14:103333544-103503831

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057740 Rpsa-ps10-201 protein_coding Mus_musculus 0 928
ENSMUST00000035105 Rpsa-201 protein_coding Mus_musculus 0 917
ENSMUST00000120702 Rpsa-ps9-001 processed_pseudogene Mus_musculus 0 893
ENSMUST00000121691 Rpsa-ps4-001 processed_pseudogene Mus_musculus 0 867
ENSMUST00000120596 Rpsa-ps12-001 processed_pseudogene Mus_musculus 0 843
ENSMUST00000120191 Gm11824-001 processed_pseudogene Mus_musculus 0 824
ENSMUST00000191040 Rpsa-ps1-001 processed_pseudogene Mus_musculus 0 822
ENSMUST00000118446 Rpsa-ps11-001 processed_pseudogene Mus_musculus 0 800
ENSMUST00000120423 Gm9083-001 processed_pseudogene Mus_musculus 0 774
ENSMUST00000186198 RP23-2I19.1-001 processed_pseudogene Mus_musculus 0 593
ENSMUST00000170597 Gm17040-001 transcribed_processed_pseudogene Mus_musculus 0 392
ENSMUST00000168672 Gm17040-002 processed_transcript Mus_musculus 4e-31 139

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