C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: G elongation factor, mitochondrial 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000486715 GFM1-001 ENSG00000168827 9606 + 3:158644278-158692575 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000486715
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000486715 2.631±0.00 6.408±0.00 9.373±0.00 3.259±1.52 4.607±0.00 3.897±0.04 1.622±0.00 2.583±0.00 3.643±0.00 6.168±0.39 5.325±3.27 10.384±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KO CIL_0008KO_0001 VISTA 3:158067861-158669043
CIL_000808 CIL_000808_0001 VISTA 3:158183764-158784540
CIL_000815 CIL_000815_0001 VISTA 3:158228062-158828791
CIL_000937 CIL_000937_0001 VISTA 3:158468467-159075583
CIL_0004JV CIL_0004JV_0002 CGP 3:158571163-158692575
CIL_0004JU CIL_0004JU_0002 CGP 3:158644278-158692575

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003746 IDA:IEA translation elongation factor activity
GO:0003924 IEA:IDA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005739 IEA mitochondrion
GO:0006184 IEA GTP catabolic process
GO:0006414 IEA translational elongation
GO:0044822 IDA poly(A) RNA binding
GO:0070125 IDA mitochondrial translational elongation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077271 Gfm1-001 protein_coding Mus_musculus 0 2362
ENSMUST00000161009 Gfm1-002 protein_coding Mus_musculus 0 1609
ENSMUST00000160529 Gfm1-003 retained_intron Mus_musculus 0 924

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