C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group nucleosome binding domain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000486741 HMGN1-006 ENSG00000205581 9606 - 21:39342315-39349099 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLungOvaryTestisENST00000486741
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Lung Ovary Testis
ENST00000486741 2.482±0.00 1.448±0.00 0.947±0.10 1.930±0.00 3.195±0.00 0.701±0.10 1.857±0.00 2.575±0.00 5.175±1.45 4.795±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004KG CIL_0004KG_0001 CGP 21:39184176-39349647
CIL_0003GM CIL_0003GM_0001 CGP 21:39342315-39428528

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000050884 Hmgn1-001 protein_coding Mus_musculus 0 508
ENSMUST00000145713 Hmgn1-003 retained_intron Mus_musculus 0 283

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