C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: shroom family member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000486758 SHROOM3-004 ENSG00000138771 9606 + 4:76689571-76742130 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyLiverLungMuscleOvaryENST00000486758
Transcript ID Brain Breast Colon Kidney Liver Lung Muscle Ovary
ENST00000486758 0.634±0.00 4.450±0.00 6.531±0.00 2.667±0.00 3.671±0.00 1.589±0.00 0.120±0.00 6.373±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VL CIL_0008VL_0001 VISTA 4:76031495-76631676
CIL_00071O CIL_00071O_0001 CGP 4:76312997-76783253
CIL_00069W CIL_00069W_0001 CGP 4:76435100-76898147

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113051 Shroom3-005 protein_coding Mus_musculus 0 2109
ENSMUST00000113054 Shroom3-003 protein_coding Mus_musculus 0 2098
ENSMUST00000113055 Shroom3-001 protein_coding Mus_musculus 0 2098
ENSMUST00000168878 Shroom3-002 protein_coding Mus_musculus 0 1509
ENSMUST00000172706 Shroom3-006 protein_coding Mus_musculus 0 617

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