C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lactation elevated 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000486863 LACE1-003 ENSG00000135537 9606 + 6:108476979-108522465 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderKidneyLiverMuscleENST00000486863
Transcript ID Adrenal Bladder Kidney Liver Muscle
ENST00000486863 0.120±0.00 0.120±0.00 0.213±0.00 0.230±0.00 0.162±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KA CIL_0007KA_0001 UCNEbase 6:107632412-108443377
CIL_0008G4 CIL_0008G4_0001 VISTA 6:107814126-108415302
CIL_0009BP CIL_0009BP_0001 VISTA 6:107816039-108417248
CIL_0008YH CIL_0008YH_0001 VISTA 6:108288605-108890079
CIL_0001OT CIL_0001OT_0002 CGP 6:108294894-108684774

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000149832 Lace1-004 nonsense_mediated_decay Mus_musculus 2e-38 165
ENSMUST00000133326 Lace1-003 nonsense_mediated_decay Mus_musculus 2e-38 165
ENSMUST00000151747 Lace1-002 protein_coding Mus_musculus 2e-38 165
ENSMUST00000041024 Lace1-001 protein_coding Mus_musculus 2e-38 165
ENSMUST00000116286 Stk40-201 protein_coding Mus_musculus 0.00006 55
ENSMUST00000127092 Stk40-002 processed_transcript Mus_musculus 0.00006 55

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