C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD51 paralog B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000487270 RAD51B-004 ENSG00000182185 9606 + 14:67819808-68595996 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainHeartKidneyLiverOvaryPlacentaTestisENST00000487270
Transcript ID Adrenal Brain Heart Kidney Liver Ovary Placenta Testis
ENST00000487270 0.311±0.00 0.118±0.02 0.073±0.00 0.106±0.00 0.198±0.17 1.234±0.20 0.349±0.00 0.250±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CJ CIL_0002CJ_0001 CGP 14:67727374-68730218
CIL_0001JV CIL_0001JV_0002 CGP 14:67819779-68796253

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000400 IDA four-way junction DNA binding
GO:0000724 IMP double-strand break repair via homologous recombination
GO:0003677 IEA:TAS DNA binding
GO:0003678 IEA DNA helicase activity
GO:0003690 IDA double-stranded DNA binding
GO:0003697 IDA:IEA single-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 TAS nucleus
GO:0005654 TAS nucleoplasm
GO:0005657 IDA replication fork
GO:0006200 IEA ATP catabolic process
GO:0006259 IEA DNA metabolic process
GO:0006260 IEA DNA replication
GO:0006281 TAS:IEA DNA repair
GO:0006310 TAS DNA recombination
GO:0007131 TAS reciprocal meiotic recombination
GO:0007596 TAS blood coagulation
GO:0008094 IEA:IDA DNA-dependent ATPase activity
GO:0009432 IEA SOS response
GO:0010971 IMP positive regulation of G2/M transition of mitotic cell cycle
GO:0033063 IDA Rad51B-Rad51C-Rad51D-XRCC2 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079533 Rad51b-201 protein_coding Mus_musculus 0 736
ENSMUST00000171210 Rad51b-202 protein_coding Mus_musculus 0 732

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