C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000487390 RP11-651P23.2-001 ENSG00000182000 9606 + 3:149984395-149984797 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLungMuscleOvaryTestisENST00000487390
Transcript ID Adipose Brain Breast Heart Kidney Lung Muscle Ovary Testis
ENST00000487390 0.068±0.00 0.036±0.00 0.034±0.00 0.156±0.00 0.170±0.00 0.062±0.00 0.180±0.00 0.108±0.02 0.262±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002R5 CIL_0002R5_0001 CGP 3:149812708-150050788
CIL_0002QZ CIL_0002QZ_0001 CGP 3:149964904-150466431

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000175860 Gm6061-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000077747 Gm9234-201 processed_pseudogene Mus_musculus 0 425
ENSMUST00000120318 Gm13493-001 processed_pseudogene Mus_musculus 0 422
ENSMUST00000075723 Gm10123-001 processed_pseudogene Mus_musculus 0 420
ENSMUST00000090749 Ppia-005 processed_transcript Mus_musculus 0 420
ENSMUST00000155824 Ppia-003 retained_intron Mus_musculus 0 420
ENSMUST00000132846 Ppia-001 protein_coding Mus_musculus 0 420
ENSMUST00000119389 Gm14046-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000120735 Gm5883-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000137829 Ppia-002 retained_intron Mus_musculus 0 407
ENSMUST00000178933 Gm5558-201 processed_pseudogene Mus_musculus 0 398
ENSMUST00000117621 Gm13750-001 processed_pseudogene Mus_musculus 0 392
ENSMUST00000081336 Gm6065-201 processed_pseudogene Mus_musculus 0 375
ENSMUST00000186816 RP23-215C21.3-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000172723 Gm5967-001 processed_pseudogene Mus_musculus 0 340
ENSMUST00000119751 Gm11469-001 processed_pseudogene Mus_musculus 0 329
ENSMUST00000118678 Gm13679-001 processed_pseudogene Mus_musculus 0 320
ENSMUST00000121223 Gm12632-001 processed_pseudogene Mus_musculus 0 254
ENSMUST00000118166 Gm13454-001 processed_pseudogene Mus_musculus 0 233
ENSMUST00000117298 Gm12842-001 processed_pseudogene Mus_musculus 0 233
ENSMUST00000069552 Gm5160-201 protein_coding Mus_musculus 5e-32 141

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