C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vimentin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000487938 VIM-002 ENSG00000026025 9606 + 10:17229278-17237593 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00046B CIL_00046B_0002 CGP 10:17142254-17237593
CIL_0005AO CIL_0005AO_0001 CGP 10:17228259-17454330

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005882 IEA intermediate filament
GO:0045111 IDA intermediate filament cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028062 Vim-001 protein_coding Mus_musculus 0 1783
ENSMUST00000155605 Vim-002 retained_intron Mus_musculus 0 990
ENSMUST00000148248 Vim-004 retained_intron Mus_musculus 0 579
ENSMUST00000141365 Vim-003 protein_coding Mus_musculus 0 527
ENSMUST00000023797 Krt4-201 protein_coding Mus_musculus 0.00000000000005 84
ENSMUST00000023786 Krt6b-201 protein_coding Mus_musculus 0.000000000002 79
ENSMUST00000023788 Krt6a-201 protein_coding Mus_musculus 0.000000000002 79
ENSMUST00000042957 Krt75-001 protein_coding Mus_musculus 0.0000000001 73
ENSMUST00000100179 Krt76-001 protein_coding Mus_musculus 0.000000001 69
ENSMUST00000023712 Krt2-001 protein_coding Mus_musculus 0.000000005 68
ENSMUST00000023952 Krt8-201 protein_coding Mus_musculus 0.000000005 68
ENSMUST00000088049 Krt86-201 protein_coding Mus_musculus 0.00000007 64
ENSMUST00000081945 Krt83-201 protein_coding Mus_musculus 0.00000007 64
ENSMUST00000061185 Krt81-201 protein_coding Mus_musculus 0.00000007 64
ENSMUST00000023718 5430421N21Rik-001 protein_coding Mus_musculus 0.00000007 64

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