C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000488906 RP5-867C24.1-001 ENSG00000239291 9606 - 17:47159191-47159993 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000488906
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000488906 0.216±0.00 0.645±0.00 0.304±0.00 0.794±0.44 0.259±0.12 0.136±0.03 0.396±0.00 0.169±0.14 0.276±0.25 0.176±0.00 0.768±0.49 0.263±0.00 0.519±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HD CIL_0008HD_0001 VISTA 17:46991162-47592148
CIL_0002QR CIL_0002QR_0001 CGP 17:47117703-47223679

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170335 Rps2-ps10-002 processed_transcript Mus_musculus 0 745
ENSMUST00000117295 Rps2-ps13-001 processed_pseudogene Mus_musculus 0 745
ENSMUST00000170715 Rps2-201 protein_coding Mus_musculus 0 745
ENSMUST00000054289 Rps2-001 protein_coding Mus_musculus 0 745
ENSMUST00000076842 Rps2-ps10-001 transcribed_processed_pseudogene Mus_musculus 0 741
ENSMUST00000079261 Gm6139-001 processed_pseudogene Mus_musculus 0 739
ENSMUST00000117071 Gm11249-001 processed_pseudogene Mus_musculus 0 736
ENSMUST00000118911 Gm11687-001 processed_pseudogene Mus_musculus 0 732
ENSMUST00000085368 Gm5786-201 protein_coding Mus_musculus 0 728
ENSMUST00000118720 Gm11599-001 processed_pseudogene Mus_musculus 0 721
ENSMUST00000075898 Gm5921-001 processed_pseudogene Mus_musculus 0 717
ENSMUST00000177599 Gm5070-001 processed_pseudogene Mus_musculus 0 717
ENSMUST00000169678 Gm6576-201 protein_coding Mus_musculus 0 712
ENSMUST00000184266 Rps2-ps5-001 processed_pseudogene Mus_musculus 0 708
ENSMUST00000071458 Gm4968-001 processed_pseudogene Mus_musculus 0 706
ENSMUST00000121722 Gm12366-001 processed_pseudogene Mus_musculus 0 699
ENSMUST00000146867 Rps2-002 protein_coding Mus_musculus 0 695
ENSMUST00000120203 Gm12933-001 processed_pseudogene Mus_musculus 0 693
ENSMUST00000121190 Gm7860-001 processed_pseudogene Mus_musculus 0 686
ENSMUST00000095471 Rps2-ps6-201 protein_coding Mus_musculus 0 682
ENSMUST00000090257 Gm8225-201 protein_coding Mus_musculus 0 678
ENSMUST00000152407 Rps2-003 protein_coding Mus_musculus 0 664
ENSMUST00000073790 Gm6311-201 pseudogene Mus_musculus 0 662
ENSMUST00000146791 Gm12091-001 processed_pseudogene Mus_musculus 0 656
ENSMUST00000121414 Rps2-ps9-001 processed_pseudogene Mus_musculus 0 619
ENSMUST00000121420 Gm12176-001 processed_pseudogene Mus_musculus 0 616
ENSMUST00000121140 Gm12109-001 processed_pseudogene Mus_musculus 0 597
ENSMUST00000117512 Gm7222-001 processed_pseudogene Mus_musculus 0 582
ENSMUST00000117955 Gm14263-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000120626 Gm12922-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000119247 Gm15653-001 processed_pseudogene Mus_musculus 0 562
ENSMUST00000119871 Gm12733-001 processed_pseudogene Mus_musculus 0 536
ENSMUST00000119217 Gm8302-001 processed_pseudogene Mus_musculus 0 532
ENSDART00000110842 rps2-201 protein_coding Danio_rerio 0 532
ENSDART00000138107 rps2-001 protein_coding Danio_rerio 0 532
ENSMUST00000121977 Rps2-ps4-001 processed_pseudogene Mus_musculus 0 523
ENSMUST00000122809 Rps2-004 retained_intron Mus_musculus 0 520
ENSMUST00000159783 Gm8194-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000129580 Rps2-005 retained_intron Mus_musculus 0 508
ENSMUST00000161130 Gm9550-001 processed_pseudogene Mus_musculus 0 496
ENSMUST00000190239 RP23-16N14.5-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000183369 Gm18014-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000121348 Gm7638-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000117930 Gm13094-001 processed_pseudogene Mus_musculus 0 424
ENSMUST00000116032 Gm16073-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000119539 Gm14234-001 processed_pseudogene Mus_musculus 0 346
ENSMUST00000129984 Rps2-007 retained_intron Mus_musculus 0 337
ENSMUST00000120471 Gm11888-001 processed_pseudogene Mus_musculus 0 324
ENSDART00000141100 rps2-002 protein_coding Danio_rerio 6e-39 165
ENSMUST00000117457 Gm11540-001 unprocessed_pseudogene Mus_musculus 2e-29 134
ENSDART00000133878 rps2-003 retained_intron Danio_rerio 1e-21 108

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