C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: non-SMC element 4 homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000489266 NSMCE4A-006 ENSG00000107672 9606 - 10:121957141-121975216 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLiverLungENST00000489266
Transcript ID Brain Colon Heart Kidney Liver Lung
ENST00000489266 0.489±0.00 1.718±0.00 1.014±0.00 1.991±0.00 1.553±0.37 1.101±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095T CIL_00095T_0001 VISTA 10:121499915-122101503
CIL_0001BD CIL_0001BD_0001 CGP 10:121740421-121975217
CIL_00047F CIL_00047F_0002 CGP 10:121957088-122254545

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000160289 Nsmce4a-001 protein_coding Mus_musculus 0 662
ENSMUST00000161076 Nsmce4a-003 nonsense_mediated_decay Mus_musculus 0 555
ENSMUST00000159694 Nsmce4a-006 protein_coding Mus_musculus 0 553
ENSMUST00000161470 Nsmce4a-004 retained_intron Mus_musculus 4.2039e-45 187
ENSMUST00000162510 Nsmce4a-005 retained_intron Mus_musculus 1.99965e-42 178
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.00000007 64
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.000003 58

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