C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CSRP2 binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000489634 CSRP2BP-005 ENSG00000149474 9606 + 20:18145099-18188387 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonPlacentaENST00000489634
Transcript ID Colon Placenta
ENST00000489634 0.629±0.00 3.732±2.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YD CIL_0008YD_0001 VISTA 20:17559199-18160694

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004402 IDA histone acetyltransferase activity
GO:0005515 IPI protein binding
GO:0005634 IPI nucleus
GO:0005671 IDA Ada2/Gcn5/Ada3 transcription activator complex
GO:0005737 IEA cytoplasm
GO:0006325 TAS chromatin organization
GO:0008080 IEA N-acetyltransferase activity
GO:0030274 NAS LIM domain binding
GO:0043966 IDA histone H3 acetylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000147747 Csrp2bp-001 protein_coding Mus_musculus 0 2344
ENSMUST00000028911 Csrp2bp-002 protein_coding Mus_musculus 0 2344
ENSMUST00000148500 Csrp2bp-003 retained_intron Mus_musculus 0 693
ENSMUST00000130654 Csrp2bp-006 processed_transcript Mus_musculus 0 531
ENSMUST00000137611 Csrp2bp-010 processed_transcript Mus_musculus 0 353
ENSMUST00000143318 Csrp2bp-009 retained_intron Mus_musculus 0 307
ENSMUST00000156410 Csrp2bp-004 nonsense_mediated_decay Mus_musculus 0 307
ENSMUST00000125398 Csrp2bp-007 protein_coding Mus_musculus 0 292

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