C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: limbic system-associated membrane protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000490035 LSAMP-001 ENSG00000185565 9606 - 3:115802388-116445531 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungOvaryPlacentaENST00000490035
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Ovary Placenta
ENST00000490035 0.135±0.00 0.230±0.00 6.107±0.85 0.706±0.53 1.663±0.76 0.429±0.18 0.291±0.00 1.020±0.20 0.477±0.11 0.320±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000L7 CIL_0000L7_0002 CGP 3:115623324-117139389

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007155 IEA cell adhesion
GO:0007399 TAS nervous system development
GO:0031225 IEA anchored component of membrane
GO:0035641 IEA locomotory exploration behavior

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099761 Lsamp-002 protein_coding Mus_musculus 0 2462
ENSMUST00000187695 Lsamp-005 protein_coding Mus_musculus 0 2259
ENSMUST00000078873 Lsamp-001 protein_coding Mus_musculus 0 1555
ENSMUST00000145951 Lsamp-003 protein_coding Mus_musculus 0 368
ENSMUST00000133853 Lsamp-004 protein_coding Mus_musculus 0 311
ENSMUST00000187185 Lsamp-010 protein_coding Mus_musculus 0 193

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