C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATPase type 13A4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000490925 ATP13A4-002 ENSG00000127249 9606 - 3:193440115-193554907 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000490925
Transcript ID Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000490925 3.038±0.00 0.506±0.00 0.439±0.00 0.140±0.00 0.052±0.00 16.079±0.00 0.371±0.13 0.047±0.00 0.062±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000N5 CIL_0000N5_0001 CGP 3:193274790-193593111
CIL_0000N8 CIL_0000N8_0001 CGP 3:193402077-193697823

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000182627 Atp13a4-001 protein_coding Mus_musculus 0 2782
ENSMUST00000039090 Atp13a4-003 protein_coding Mus_musculus 0 2662
ENSMUST00000182013 Atp13a4-002 nonsense_mediated_decay Mus_musculus 0 1964
ENSMUST00000182573 Atp13a4-007 nonsense_mediated_decay Mus_musculus 0 1598
ENSMUST00000057018 Atp13a4-006 protein_coding Mus_musculus 0 1373
ENSMUST00000182357 Atp13a4-008 retained_intron Mus_musculus 0 669
ENSMUST00000143373 Atp13a5-003 protein_coding Mus_musculus 0 237
ENSMUST00000142681 Atp13a5-002 nonsense_mediated_decay Mus_musculus 0 237
ENSMUST00000075806 Atp13a5-001 protein_coding Mus_musculus 0 237

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