C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000491760 RP11-255I10.1-001 ENSG00000241722 9606 + 4:111551854-111552173 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonMuscleOvaryENST00000491760
Transcript ID Adipose Adrenal Brain Breast Colon Muscle Ovary
ENST00000491760 0.095±0.00 0.050±0.00 0.052±0.00 0.051±0.00 0.047±0.00 0.091±0.00 0.187±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007P9 CIL_0007P9_0001 UCNEbase 4:110617607-112523533
CIL_00091P CIL_00091P_0001 VISTA 4:111098568-111701181
CIL_0008C3 CIL_0008C3_0001 VISTA 4:111200646-111801749
CIL_0007RE CIL_0007RE_0001 VISTA 4:111335318-111937136
CIL_0007RN CIL_0007RN_0001 VISTA 4:111447146-112048759

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113211 Rpl36a-001 protein_coding Mus_musculus 0 355
ENSMUST00000172023 Rpl36a-003 retained_intron Mus_musculus 0 351
ENSMUST00000170828 Rpl36a-004 nonsense_mediated_decay Mus_musculus 0 350
ENSMUST00000149857 Rpl36a-005 retained_intron Mus_musculus 0 346
ENSMUST00000169457 Rpl36a-006 retained_intron Mus_musculus 0 187

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