C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: collagen, type VI, alpha 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000491769 COL6A3-009 ENSG00000163359 9606 - 2:237324019-237355779 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainTestisENST00000491769
Transcript ID Bladder Brain Testis
ENST00000491769 0.595±0.00 0.194±0.00 3.458±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008L9 CIL_0008L9_0001 VISTA 2:237013177-237616630
CIL_0000XQ CIL_0000XQ_0001 CGP 2:237085312-237414375
CIL_0007RW CIL_0007RW_0001 VISTA 2:237313736-237917924
CIL_000439 CIL_000439_0001 CGP 2:237324003-237555318

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000056925 Col6a3-201 protein_coding Mus_musculus 0 1125
ENSMUST00000188587 Col6a3-202 protein_coding Mus_musculus 0 1125
ENSMUST00000097653 Col6a3-001 protein_coding Mus_musculus 0 1125
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.000009 58

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