C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000492041 RP11-85G20.2-001 ENSG00000241499 9606 + 14:93244010-93244323 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainHeartKidneyLungOvaryTestisENST00000492041
Transcript ID Adipose Brain Heart Kidney Lung Ovary Testis
ENST00000492041 0.049±0.00 0.055±0.00 0.146±0.00 0.054±0.00 0.053±0.00 0.886±0.00 0.142±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061C CIL_00061C_0002 CGP 14:93207056-93333092

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113211 Rpl36a-001 protein_coding Mus_musculus 0 292
ENSMUST00000172023 Rpl36a-003 retained_intron Mus_musculus 0 289
ENSMUST00000170828 Rpl36a-004 nonsense_mediated_decay Mus_musculus 0 287
ENSMUST00000149857 Rpl36a-005 retained_intron Mus_musculus 0 283
ENSMUST00000081987 Rpl36a-ps1-201 processed_pseudogene Mus_musculus 0 281
ENSMUST00000116105 Gm11970-001 processed_pseudogene Mus_musculus 0 257
ENSMUST00000142299 Gm13194-001 processed_pseudogene Mus_musculus 0 235
ENSMUST00000121439 Gm12936-001 processed_pseudogene Mus_musculus 2e-35 152
ENSMUST00000152266 Rpl36a-002 retained_intron Mus_musculus 1e-31 139

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