C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) II (DNA directed) polypeptide F
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000492213 POLR2F-006 ENSG00000100142 9606 + 22:37953699-37967694 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderHeartLiverOvaryPlacentaTestisENST00000492213
Transcript ID Bladder Heart Liver Ovary Placenta Testis
ENST00000492213 3.190±0.00 11.293±8.22 24.940±0.00 53.074±0.00 46.451±0.00 48.772±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0001 VISTA 22:37683926-38284300
CIL_0008KJ CIL_0008KJ_0001 VISTA 22:37685616-38286450
CIL_0008BX CIL_0008BX_0001 VISTA 22:37696030-38296592
CIL_0008KA CIL_0008KA_0001 VISTA 22:37698338-38299192
CIL_00082J CIL_00082J_0001 VISTA 22:37733233-38334508
CIL_0008C1 CIL_0008C1_0001 VISTA 22:37746133-38346872
CIL_00082K CIL_00082K_0001 VISTA 22:37750385-38350990
CIL_0008MM CIL_0008MM_0001 VISTA 22:37872841-38473542
CIL_0006F9 CIL_0006F9_0002 CGP 22:37905657-37953669
CIL_0003QJ CIL_0003QJ_0001 CGP 22:37943050-38041915
CIL_0007CX CIL_0007CX_0001 CGP 22:37952607-38041915

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005665 IEA DNA-directed RNA polymerase II, core complex
GO:0006351 IEA transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040077 Polr2f-201 protein_coding Mus_musculus 0 359

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