C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000492222 RP11-51O6.1-001 ENSG00000224631 9606 - 16:61055445-61055914 transcribed_processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartMuscleOvaryPlacentaENST00000492222
Transcript ID Breast Heart Muscle Ovary Placenta
ENST00000492222 0.093±0.00 0.028±0.00 0.055±0.00 0.310±0.00 0.203±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EU CIL_0008EU_0001 VISTA 16:60723614-61325721
CIL_00085S CIL_00085S_0001 VISTA 16:60800560-61402310
CIL_0008F5 CIL_0008F5_0001 VISTA 16:60909259-61510530

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102844 Rps27a-004 protein_coding Mus_musculus 0 678
ENSMUST00000102845 Rps27a-003 protein_coding Mus_musculus 0 678
ENSMUST00000119780 Gm8430-001 processed_pseudogene Mus_musculus 0 673
ENSMUST00000078766 Rps27a-ps2-001 processed_pseudogene Mus_musculus 0 667
ENSMUST00000117559 Gm13215-001 processed_pseudogene Mus_musculus 0 662
ENSMUST00000121261 Gm8317-001 processed_pseudogene Mus_musculus 0 617
ENSMUST00000121742 Gm11759-001 processed_pseudogene Mus_musculus 0 571
ENSMUST00000119963 Gm13815-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000160015 Gm16139-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000120658 Gm13622-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000121696 Gm12882-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000191424 RP24-388H6.1-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000147782 Rps27a-002 processed_transcript Mus_musculus 0 405
ENSMUST00000121502 Gm14101-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000181136 Gm27018-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000120373 Gm13532-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000150739 Rps27a-005 processed_transcript Mus_musculus 4e-34 148
ENSMUST00000143418 Rps27a-001 processed_transcript Mus_musculus 6e-17 92
ENSMUST00000185489 RP23-125B4.3-001 processed_pseudogene Mus_musculus 0 438

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