C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: leucine proline-enriched proteoglycan (leprecan) 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000492956 LEPRE1-003 ENSG00000117385 9606 - 1:42759986-42767017 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleENST00000492956
Transcript ID Brain Muscle
ENST00000492956 0.460±0.00 0.190±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PM CIL_0008PM_0001 VISTA 1:42456139-43057783
CIL_0005B1 CIL_0005B1_0002 CGP 1:42733093-42767084
CIL_0005B2 CIL_0005B2_0002 CGP 1:42746335-42794493

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000136278 Lepre1-004 nonsense_mediated_decay Mus_musculus 0 555
ENSMUST00000102662 Lepre1-003 protein_coding Mus_musculus 0 555
ENSMUST00000153940 Lepre1-002 processed_transcript Mus_musculus 0 555
ENSMUST00000030393 Lepre1-012 protein_coding Mus_musculus 0 555
ENSMUST00000121111 Lepre1-001 protein_coding Mus_musculus 0 555
ENSMUST00000121101 Rspry1-002 protein_coding Mus_musculus 0.000001 60

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