C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000493253 KRT17-003 ENSG00000128422 9606 - 17:41619446-41624296 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastHeartLiverLungENST00000493253
Transcript ID Adrenal Breast Heart Liver Lung
ENST00000493253 0.050±0.00 12.014±0.00 0.067±0.00 0.886±0.00 0.837±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056U CIL_00056U_000M CGP 17:41609778-41624842
CIL_0000TT CIL_0000TT_0002 CGP 17:41619437-41692668

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080893 Krt17-001 protein_coding Mus_musculus 0 861
ENSMUST00000007272 Krt14-001 protein_coding Mus_musculus 0 667
ENSMUST00000137265 Krt14-002 processed_transcript Mus_musculus 0 667
ENSMUST00000017270 Krt42-001 protein_coding Mus_musculus 0 459
ENSMUST00000107406 Krt42-002 retained_intron Mus_musculus 0 459
ENSMUST00000007317 Krt19-001 protein_coding Mus_musculus 0 433
ENSMUST00000007280 Krt16-001 protein_coding Mus_musculus 0 388
ENSMUST00000121423 Gm11597-001 unprocessed_pseudogene Mus_musculus 0 383
ENSMUST00000107411 Krt15-001 protein_coding Mus_musculus 0 366
ENSMUST00000007275 Krt13-001 protein_coding Mus_musculus 0 298
ENSMUST00000126460 Krt19-002 processed_transcript Mus_musculus 0 279
ENSMUST00000103131 Krt10-001 protein_coding Mus_musculus 0 265
ENSMUST00000128934 Krt13-002 processed_transcript Mus_musculus 0 200
ENSMUST00000148502 Krt15-002 retained_intron Mus_musculus 4.06377e-44 183
ENSMUST00000100482 Krt26-001 protein_coding Mus_musculus 5e-38 163
ENSMUST00000038004 Krt25-001 protein_coding Mus_musculus 3e-35 154
ENSMUST00000148770 Krt26-002 processed_transcript Mus_musculus 5e-23 113

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