C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000493466 RP11-9D8.1-001 ENSG00000239532 9606 + 4:37821361-37821838 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000493466
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000493466 0.029±0.00 0.331±0.00 0.091±0.00 0.239±0.00 0.251±0.00 0.028±0.00 0.090±0.00 0.054±0.00 0.202±0.00 0.163±0.00 0.137±0.04 0.192±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002FG CIL_0002FG_0001 CGP 4:37590800-37862937

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099272 Rpl21-003 protein_coding Mus_musculus 0 510
ENSMUST00000075453 Rpl21-002 protein_coding Mus_musculus 0 510
ENSMUST00000035983 Rpl21-001 protein_coding Mus_musculus 0 510
ENSMUST00000084598 Gm10155-201 processed_pseudogene Mus_musculus 0 505
ENSMUST00000160079 Gm3355-001 processed_pseudogene Mus_musculus 0 503
ENSMUST00000121545 Rpl21-ps15-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000119328 Gm14648-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000155008 Gm10163-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000121309 Gm13370-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000089785 Gm10240-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000118352 Gm11703-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000130005 Rpl21-ps8-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000119140 Gm12411-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000076314 Gm5528-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000121563 Gm15682-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000080279 Rpl21-ps14-201 processed_pseudogene Mus_musculus 0 483
ENSMUST00000071237 Rpl21-ps10-201 processed_pseudogene Mus_musculus 0 483
ENSMUST00000095268 Gm9104-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000178657 Gm10045-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000093411 Gm8054-201 processed_pseudogene Mus_musculus 0 475
ENSMUST00000119332 Gm13604-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000122260 Gm13653-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000180049 Gm6919-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000119542 Gm15921-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000119897 Rpl21-ps9-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000081668 Rpl21-ps12-201 processed_pseudogene Mus_musculus 0 466
ENSMUST00000080330 Gm10916-201 processed_pseudogene Mus_musculus 0 460
ENSMUST00000077420 Rpl21-ps7-201 processed_pseudogene Mus_musculus 0 455
ENSMUST00000080223 Rpl21-ps3-201 processed_pseudogene Mus_musculus 0 455
ENSMUST00000072532 Rpl21-ps13-201 processed_pseudogene Mus_musculus 0 455
ENSMUST00000117993 Gm13641-001 processed_pseudogene Mus_musculus 0 453
ENSMUST00000153140 Gm16060-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000117861 Gm12760-001 processed_pseudogene Mus_musculus 0 449
ENSMUST00000179660 Gm16416-201 processed_pseudogene Mus_musculus 0 449
ENSMUST00000095940 Rpl21-ps5-201 processed_pseudogene Mus_musculus 0 449
ENSMUST00000118772 Gm11975-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000117491 Gm14336-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000121800 Gm8880-001 processed_pseudogene Mus_musculus 0 442
ENSMUST00000077278 Rpl21-ps11-201 processed_pseudogene Mus_musculus 0 442
ENSMUST00000080097 Gm16415-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000119242 Gm14115-001 processed_pseudogene Mus_musculus 0 427
ENSMUST00000130905 Gm6689-001 processed_pseudogene Mus_musculus 0 422
ENSMUST00000121754 Gm12618-001 processed_pseudogene Mus_musculus 0 422
ENSMUST00000120315 Gm9378-001 processed_pseudogene Mus_musculus 0 414
ENSMUST00000120607 Gm13525-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000079153 Gm8526-201 processed_pseudogene Mus_musculus 0 412
ENSMUST00000121662 Gm14053-001 processed_pseudogene Mus_musculus 0 405
ENSMUST00000141391 Gm11281-001 processed_pseudogene Mus_musculus 0 399
ENSMUST00000074828 Rpl21-ps6-001 processed_pseudogene Mus_musculus 0 392
ENSMUST00000122454 Gm8840-001 processed_pseudogene Mus_musculus 0 392
ENSMUST00000080061 Gm8724-201 processed_pseudogene Mus_musculus 0 372
ENSMUST00000117320 Gm15578-001 unprocessed_pseudogene Mus_musculus 0 364
ENSMUST00000119262 Gm12944-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000080237 Rpl21-ps4-201 protein_coding Mus_musculus 0 320
ENSMUST00000121644 Gm15309-001 processed_pseudogene Mus_musculus 0 243
ENSMUST00000118827 Gm15312-001 processed_pseudogene Mus_musculus 0 243
ENSMUST00000117461 Gm14657-001 processed_pseudogene Mus_musculus 0 233
ENSMUST00000185232 RP23-478I8.1-001 processed_pseudogene Mus_musculus 0 217
ENSMUST00000119382 Gm14106-001 processed_pseudogene Mus_musculus 0 213
ENSMUST00000151871 Rpl21-005 retained_intron Mus_musculus 2.8026e-45 185
ENSMUST00000120018 Gm13518-001 processed_pseudogene Mus_musculus 8.00001e-41 171
ENSMUST00000119221 Gm12934-001 processed_pseudogene Mus_musculus 2e-32 143
ENSMUST00000170118 Gm17113-001 processed_pseudogene Mus_musculus 5e-28 128
ENSMUST00000154768 Rpl21-004 retained_intron Mus_musculus 8e-21 104

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