C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FYVE, RhoGEF and PH domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000494343 FGD2-007 ENSG00000146192 9606 + 6:37013025-37029069 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungPlacentaENST00000494343
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Placenta
ENST00000494343 0.650±0.00 3.954±0.00 0.423±0.00 0.225±0.00 0.534±0.00 0.152±0.00 0.572±0.00 0.261±0.00 1.353±0.00 1.364±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089L CIL_00089L_0001 VISTA 6:36799205-37399713
CIL_0002Y4 CIL_0002Y4_0001 CGP 6:36968141-37029070
CIL_0002Y3 CIL_0002Y3_0001 CGP 6:37005646-37175426

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000024810 Fgd2-001 protein_coding Mus_musculus 0 1528
ENSMUST00000123989 Fgd2-002 nonsense_mediated_decay Mus_musculus 0 1158
ENSMUST00000137644 Fgd2-005 retained_intron Mus_musculus 0 490
ENSMUST00000138537 Fgd2-008 retained_intron Mus_musculus 0 329
ENSMUST00000125620 Fgd1-004 retained_intron Mus_musculus 0.00000009 64
ENSMUST00000026296 Fgd1-001 protein_coding Mus_musculus 0.00000009 64
ENSMUST00000112685 Fgd1-002 protein_coding Mus_musculus 0.00000009 64

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