C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L13a pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000494676 RPL13AP3-002 ENSG00000177350 9606 + 14:55766245-55767717 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonLungMuscleOvaryTestisENST00000494676
Transcript ID Adipose Adrenal Bladder Breast Colon Lung Muscle Ovary Testis
ENST00000494676 0.035±0.00 0.060±0.00 0.209±0.00 0.036±0.00 0.076±0.00 0.024±0.00 0.106±0.00 0.072±0.03 0.881±0.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000604 CIL_000604_0002 CGP 14:55559072-56301526

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000150350 Rpl13a-001 protein_coding Mus_musculus 0 586
ENSMUST00000124300 Rpl13a-011 protein_coding Mus_musculus 0 556
ENSMUST00000117851 Gm11478-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000102669 Rpl13a-009 nonsense_mediated_decay Mus_musculus 0 505
ENSMUST00000125074 Rpl13a-006 processed_transcript Mus_musculus 0 483
ENSMUST00000118217 Gm6023-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000071866 Rpl13a-ps1-201 protein_coding Mus_musculus 0 449
ENSMUST00000125936 Rpl13a-008 retained_intron Mus_musculus 0 375
ENSMUST00000152970 Rpl13a-003 retained_intron Mus_musculus 0 300
ENSMUST00000142239 Rpl13a-010 processed_transcript Mus_musculus 0 270

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