C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chondroitin polymerizing factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000495645 CHPF2-002 ENSG00000033100 9606 + 7:151232489-151238819 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungOvaryPlacentaENST00000495645
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Ovary Placenta
ENST00000495645 4.896±0.00 8.835±0.00 4.012±0.00 4.871±0.00 7.583±0.00 4.052±0.00 7.058±0.00 5.203±0.00 7.290±1.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0001 VISTA 7:150668461-151272977
CIL_0007RX CIL_0007RX_0001 VISTA 7:151109813-151711422
CIL_0000KE CIL_0000KE_0002 CGP 7:151207837-151238827
CIL_0006DG CIL_0006DG_0002 CGP 7:151232489-151277896

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008152 IEA metabolic process
GO:0008376 IEA acetylgalactosaminyltransferase activity
GO:0016020 IEA membrane
GO:0016757 IEA transferase activity, transferring glycosyl groups
GO:0032580 IEA Golgi cisterna membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088295 Chpf2-201 protein_coding Mus_musculus 0 2804
ENSMUST00000121863 Chpf2-001 protein_coding Mus_musculus 0 2804
ENSMUST00000144995 Smarcd3-002 retained_intron Mus_musculus 0 1544
ENSMUST00000138683 Chpf-003 nonsense_mediated_decay Mus_musculus 0.0000000000002 82
ENSMUST00000143496 Chpf-004 retained_intron Mus_musculus 0.0000000000002 82
ENSMUST00000094818 Chpf-002 protein_coding Mus_musculus 0.0000000000002 82
ENSMUST00000079205 Chpf-001 protein_coding Mus_musculus 0.0000000000002 82

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