C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000496042 RP11-452G18.1-001 ENSG00000213779 9606 + 11:17193489-17194308 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyMuscleOvaryTestisENST00000496042
Transcript ID Adipose Brain Breast Colon Heart Kidney Muscle Ovary Testis
ENST00000496042 0.166±0.00 0.049±0.00 0.190±0.00 0.265±0.05 0.041±0.00 0.182±0.00 0.195±0.00 0.073±0.01 0.121±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000836 CIL_000836_0001 VISTA 11:16591589-17196198
CIL_0003ZW CIL_0003ZW_0001 CGP 11:17074389-17207983
CIL_0003ZV CIL_0003ZV_0001 CGP 11:17077730-17349974

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075962 Gm6344-001 processed_pseudogene Mus_musculus 0 217
ENSMUST00000133732 Gm10913-001 processed_pseudogene Mus_musculus 0 217
ENSMUST00000059802 Rpl29-002 protein_coding Mus_musculus 0 217
ENSMUST00000150576 Rpl29-001 protein_coding Mus_musculus 0 217
ENSMUST00000128641 Uimc1-003 retained_intron Mus_musculus 0 217
ENSMUST00000098994 Gm10709-201 protein_coding Mus_musculus 0 217
ENSMUST00000118829 Gm13841-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000119789 Gm12704-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000118248 Gm14036-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000178557 Gm8210-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000179718 Gm15454-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000178932 Gm5561-201 processed_pseudogene Mus_musculus 0 206
ENSMUST00000119110 Gm12447-001 processed_pseudogene Mus_musculus 0 206
ENSMUST00000105038 Gm3550-201 protein_coding Mus_musculus 0 206
ENSMUST00000117417 Gm13141-001 processed_pseudogene Mus_musculus 0 200
ENSMUST00000112504 Gm15526-001 processed_pseudogene Mus_musculus 0 200
ENSMUST00000119668 Gm13213-001 processed_pseudogene Mus_musculus 0 200
ENSMUST00000086508 Rpl29-ps2-201 processed_pseudogene Mus_musculus 0 200
ENSMUST00000163749 Gm17669-201 protein_coding Mus_musculus 0 198
ENSMUST00000077493 Gm8412-001 processed_pseudogene Mus_musculus 0 196
ENSMUST00000120287 Gm11533-001 processed_pseudogene Mus_musculus 0 195
ENSMUST00000119175 Gm11449-001 processed_pseudogene Mus_musculus 0 195
ENSMUST00000075152 Gm4945-001 processed_pseudogene Mus_musculus 0 195
ENSMUST00000118562 Gm12987-001 processed_pseudogene Mus_musculus 0 193
ENSMUST00000172270 Gm5218-201 protein_coding Mus_musculus 0 191
ENSMUST00000121282 Gm12508-001 processed_pseudogene Mus_musculus 0 189
ENSMUST00000119044 Gm13545-001 processed_pseudogene Mus_musculus 0 189
ENSMUST00000117250 Gm12193-001 processed_pseudogene Mus_musculus 9.94922e-44 180
ENSMUST00000119801 Gm11955-001 processed_pseudogene Mus_musculus 6.00036e-42 174
ENSMUST00000122403 Gm15212-001 processed_pseudogene Mus_musculus 8e-36 154
ENSMUST00000176181 Gm20702-001 processed_pseudogene Mus_musculus 2e-32 143
ENSMUST00000161849 Rpl29-ps1-001 processed_pseudogene Mus_musculus 1e-24 117
ENSMUST00000118520 Gm11926-001 processed_pseudogene Mus_musculus 0.000000000006 75

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