C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000496294 RP11-234A1.1-001 ENSG00000242299 9606 - 3:101576489-101576947 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000496294
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000496294 0.753±0.00 0.388±0.00 0.468±0.00 0.867±0.00 0.290±0.00 0.310±0.25 0.761±0.58 0.040±0.00 0.578±0.00 0.533±0.00 3.492±4.77 0.299±0.20 0.182±0.13

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000008812 Rps18-001 protein_coding Mus_musculus 0 606
ENSMUST00000174745 Rps18-011 processed_transcript Mus_musculus 0 603
ENSMUST00000077163 Gm11361-001 processed_pseudogene Mus_musculus 0 601
ENSMUST00000074072 Gm10260-201 protein_coding Mus_musculus 0 595
ENSMUST00000080443 Rps18-ps3-201 protein_coding Mus_musculus 0 571
ENSMUST00000120838 Rps18-ps1-001 processed_pseudogene Mus_musculus 0 568
ENSMUST00000174609 Rps18-006 protein_coding Mus_musculus 0 510
ENSMUST00000072050 Gm5321-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000121730 Gm15696-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000172799 Rps18-002 processed_transcript Mus_musculus 0 451
ENSMUST00000174620 Rps18-012 retained_intron Mus_musculus 0 449
ENSMUST00000174758 Rps18-008 retained_intron Mus_musculus 0 449
ENSMUST00000174175 Rps18-005 retained_intron Mus_musculus 0 409
ENSMUST00000174662 Rps18-003 retained_intron Mus_musculus 1e-38 163

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