C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: catenin (cadherin-associated protein), alpha 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000496558 CTNNA2-001 ENSG00000066032 9606 + 2:79513000-80648780 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonLiverOvaryTestisENST00000496558
Transcript ID Brain Colon Liver Ovary Testis
ENST00000496558 34.880±8.81 0.762±0.65 0.069±0.00 0.043±0.00 3.963±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NY CIL_0003NY_0001 CGP 2:79185231-80648861

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005200 NAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005912 ISS adherens junction
GO:0007155 IEA cell adhesion
GO:0007409 ISS axonogenesis
GO:0015629 IEA actin cytoskeleton
GO:0016337 ISS single organismal cell-cell adhesion
GO:0021942 ISS radial glia guided migration of Purkinje cell
GO:0030424 ISS axon
GO:0042692 TAS muscle cell differentiation
GO:0045296 IEA cadherin binding
GO:0048813 ISS dendrite morphogenesis
GO:0048854 ISS brain morphogenesis
GO:0051015 IEA actin filament binding
GO:0051149 TAS positive regulation of muscle cell differentiation
GO:0051823 ISS regulation of synapse structural plasticity
GO:0060134 ISS prepulse inhibition

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161846 Ctnna2-001 protein_coding Mus_musculus 0 4377
ENSMUST00000075340 Ctnna2-201 protein_coding Mus_musculus 0 3709
ENSMUST00000159626 Ctnna2-003 protein_coding Mus_musculus 0 3275
ENSMUST00000160894 Ctnna2-002 protein_coding Mus_musculus 0 3168
ENSMUST00000162273 Ctnna2-004 protein_coding Mus_musculus 0 1447
ENSMUST00000160252 Ctnna2-005 processed_transcript Mus_musculus 7e-35 154
ENSMUST00000162991 Ctnna2-006 retained_intron Mus_musculus 9e-24 117

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