C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 13 (isopeptidase T-3)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000496897 USP13-003 ENSG00000058056 9606 + 3:179653693-179784406 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryENST00000496897
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000496897 0.846±0.00 0.807±0.00 2.303±0.00 0.328±0.00 7.598±0.00 1.721±0.00 1.592±0.00 2.544±0.00 11.116±0.00 2.238±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00049V CIL_00049V_0002 CGP 3:179604690-179789401
CIL_0003YE CIL_0003YE_0002 CGP 3:179652755-180037053

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004197 IMP cysteine-type endopeptidase activity
GO:0004221 IDA ubiquitin thiolesterase activity
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005515 IPI:IEA protein binding
GO:0006355 IMP regulation of transcription, DNA-templated
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0006914 IEA autophagy
GO:0008242 IEA omega peptidase activity
GO:0008270 IEA zinc ion binding
GO:0008283 IMP cell proliferation
GO:0010506 IDA regulation of autophagy
GO:0030318 TAS melanocyte differentiation
GO:0031625 IPI ubiquitin protein ligase binding
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0043130 IDA ubiquitin binding
GO:0050821 IDA protein stabilization
GO:0070536 IDA protein K63-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072312 Usp13-001 protein_coding Mus_musculus 0 3011
ENSMUST00000108228 Usp13-002 protein_coding Mus_musculus 0 2974
ENSMUST00000172481 Usp13-004 nonsense_mediated_decay Mus_musculus 0 1781
ENSDART00000065293 usp13-001 protein_coding Danio_rerio 5e-40 171

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