C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000497089 HOXA9-002 ENSG00000078399 9606 - 7:27162600-27169444 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastHeartKidneyLungPlacentaENST00000497089
Transcript ID Bladder Breast Heart Kidney Lung Placenta
ENST00000497089 1.079±0.00 1.808±0.00 0.078±0.00 6.101±0.00 0.047±0.00 2.480±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0008QL CIL_0008QL_0001 VISTA 7:26816432-27417045
CIL_000911 CIL_000911_0001 VISTA 7:26910239-27511438
CIL_000811 CIL_000811_0001 VISTA 7:26948649-27549872
CIL_00097P CIL_00097P_0001 VISTA 7:27075631-27678581
CIL_0003PA CIL_0003PA_0001 CGP 7:27153716-27175180
CIL_0006I0 CIL_0006I0_0002 CGP 7:27162435-27180013

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000048680 Hoxa9-001 protein_coding Mus_musculus 0 1144
ENSMUST00000154641 Hoxa9-004 processed_transcript Mus_musculus 0 525
ENSMUST00000114425 Hoxa9-002 protein_coding Mus_musculus 0 418
ENSDART00000153363 protein_coding Danio_rerio 0.000000000001 79
ENSMUST00000001709 Hoxc5-001 protein_coding Mus_musculus 0.00000000007 73
ENSMUST00000174869 Hoxc5-002 processed_transcript Mus_musculus 0.00000000007 73
ENSDART00000057730 dbx2-201 protein_coding Danio_rerio 0.00000001 66

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