C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vascular endothelial growth factor A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000497139 VEGFA-008 ENSG00000112715 9606 + 6:43777720-43786439 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000497139
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000497139 19.675±0.00 3.459±0.00 5.500±0.00 3.431±0.00 4.394±0.00 10.190±0.00 6.561±0.00 10.642±0.00 4.066±0.00 28.361±35.69 1.513±0.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YI CIL_0008YI_0001 VISTA 6:43493027-44094540

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167860 Vegfa-201 protein_coding Mus_musculus 0 1618
ENSMUST00000024747 Vegfa-008 protein_coding Mus_musculus 0 1618
ENSMUST00000071648 Vegfa-001 protein_coding Mus_musculus 0 1465
ENSMUST00000150327 Vegfa-007 retained_intron Mus_musculus 0 880
ENSMUST00000133605 Vegfa-004 retained_intron Mus_musculus 0 470
ENSMUST00000142321 Vegfa-005 retained_intron Mus_musculus 0 455
ENSMUST00000142351 Vegfa-003 protein_coding Mus_musculus 0 346
ENSMUST00000113519 Vegfa-009 protein_coding Mus_musculus 1e-35 156
ENSMUST00000113520 Vegfa-010 protein_coding Mus_musculus 1e-35 156
ENSMUST00000143985 Vegfa-006 retained_intron Mus_musculus 8e-33 147

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