C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin related protein 2/3 complex, subunit 4, 20kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000498623 ARPC4-005 ENSG00000241553 9606 + 3:9792495-9806442 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyLiverLungMuscleOvaryTestisENST00000498623
Transcript ID Adipose Brain Breast Colon Kidney Liver Lung Muscle Ovary Testis
ENST00000498623 88.641±0.00 68.185±0.00 81.151±0.00 85.444±0.00 85.943±0.00 29.185±0.00 78.422±0.00 39.038±0.00 121.145±0.00 87.629±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WT CIL_0002WT_0001 CGP 3:9757342-9793011
CIL_0002WP CIL_0002WP_0001 CGP 3:9779860-9807726
CIL_0005IQ CIL_0005IQ_0001 CGP 3:9792495-9835401

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005200 IDA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0005885 IEA:IDA Arp2/3 protein complex
GO:0015629 IEA actin cytoskeleton
GO:0019899 IPI enzyme binding
GO:0030041 IEA actin filament polymerization
GO:0030674 IPI protein binding, bridging
GO:0034314 IEA:IDA Arp2/3 complex-mediated actin nucleation
GO:0038096 TAS Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0042995 IEA cell projection
GO:0045010 NAS actin nucleation
GO:0045087 TAS innate immune response
GO:0051015 NAS actin filament binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000156898 Arpc4-001 protein_coding Mus_musculus 0 893
ENSMUST00000138722 Arpc4-003 processed_transcript Mus_musculus 0 891
ENSMUST00000102708 Arpc4-002 processed_transcript Mus_musculus 0 717
ENSMUST00000171058 Arpc4-201 protein_coding Mus_musculus 0 555

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