C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 27
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000502784 NPM1P27-001 ENSG00000249353 9606 - 5:93682838-93683667 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000502784
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000502784 0.014±0.00 0.044±0.00 0.493±0.00 0.076±0.05 0.574±0.56 0.173±0.16 0.054±0.02 0.219±0.10 0.151±0.14 0.656±0.00 0.074±0.06 0.949±1.12 0.070±0.04 0.077±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N1 CIL_0007N1_0003 UCNEbase 5:93009012-93909237
CIL_0008KX CIL_0008KX_0001 VISTA 5:93105796-93709037
CIL_00083A CIL_00083A_0001 VISTA 5:93175759-93777511
CIL_0005KH CIL_0005KH_0002 CGP 5:93583337-94111699
CIL_0008SK CIL_0008SK_0001 VISTA 5:93591279-94192616
CIL_0004Z9 CIL_0004Z9_0001 CGP 5:93618069-94111699

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 1086
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 918
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 917
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 887
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 800
ENSMUST00000172394 Gm17060-001 processed_pseudogene Mus_musculus 0 778
ENSMUST00000120677 Gm12583-001 processed_pseudogene Mus_musculus 0 758
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 640
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000121029 Gm14776-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000117205 Gm13423-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000141881 Npm1-004 processed_transcript Mus_musculus 9.99995e-41 171
ENSMUST00000146759 Npm1-005 processed_transcript Mus_musculus 0 315
ENSMUST00000168993 Gm7289-001 processed_pseudogene Mus_musculus 0 671

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