C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger protein 346
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000503425 ZNF346-004 ENSG00000113761 9606 + 5:177022704-177064966 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartLungMuscleOvaryPlacentaENST00000503425
Transcript ID Colon Heart Lung Muscle Ovary Placenta
ENST00000503425 0.439±0.00 0.759±0.00 0.561±0.00 0.799±0.00 0.371±0.00 1.911±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000OX CIL_0000OX_0003 CGP 5:176905005-177081189
CIL_0000OR CIL_0000OR_0002 CGP 5:177022696-177098144

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003725 IDA double-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0019899 IPI enzyme binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000159147 Zfp346-002 protein_coding Mus_musculus 0 942
ENSMUST00000021937 Zfp346-001 protein_coding Mus_musculus 0 665
ENSMUST00000162476 Zfp346-003 nonsense_mediated_decay Mus_musculus 0 448
ENSMUST00000159278 Zfp346-004 protein_coding Mus_musculus 0 433
ENSMUST00000160310 Zfp346-010 retained_intron Mus_musculus 0 409
ENSMUST00000161551 Zfp346-013 nonsense_mediated_decay Mus_musculus 0 355
ENSMUST00000161077 Zfp346-009 protein_coding Mus_musculus 0 259
ENSMUST00000162428 Zfp346-012 nonsense_mediated_decay Mus_musculus 0 259

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